Table 1 Cell types and their gene signatures in C58/J amygdala
Cell Type | Cell Type Gene Signature |
|---|---|
L2/3 IT CTX | Cux2, Rtn4rl1, Slc30a3, Lrrtm4 |
L2 IT ENTL | Grik1, Pdzrn3, Plcxd3, Efna5 |
L6 IT CTX Brinp3 | C1ql3, Cdh13, Brinp3 |
L5 ET Tshz2 | Tshz2, Sgcz, Tox |
L6b CT CTX | Ccn2, Hs3st4, Cdh18, Vwc2l |
L6b CT ENT | Tfap2d, Zfpm2, Tshz2 |
L5/6 NP CTX | Grik1, Mgat4c Tshz2, Kcnip1 |
L5 IT CTX Pld5 | Car10, Pld5, Hs6st3, Kctd8 |
L5 IT CTX Rspo1 | Car10, Prr16, Brinp3, Zbtb7c, Rspo1 |
NP SUB | Foxp2, Kcnip1, Tshz2, Grik1 |
L5 ET Penk | Sgcz, Penk, Rarb, Tshz2 |
L2/3 IT ENT | Lrrtm4, Car10 |
L6 CT CTX Garnl3 | Garnl3, Grp, Syt6, Hs3st4 |
Lamp5-Pdlim5-GABA | Lamp5, Pdlim5, Nxph1, Ndnf |
Lamp5-Meis2-GABA | Lamp5, Meis2, Pbx3, Chst9 |
Sncg GABA | Ntng1, Pcdh11x, Pax6, Luzp2, Sncg |
Vip GABA | Vip, Tac2, Crh, Cnr1 |
Pvalb GABA | Pvalb, Lrrc4c, Thsd7a, Cntnap5c, Kcnmb2 |
Sst GABA | Sst, Sox6, Grin3a, Grm1 |
Meis2-Penk-GABA | Meis2, Penk, Sp8, Lockd |
OPCs | Pcdh15, Pdgfra, Lhfpl3 |
Differentiating Oligodendrocytes | Itpr2, Bcas1, Tnr |
Mature Oligodendrocytes | Trf, Mal, Prr5l |
Astrocytes | Slc1a2, Plpp3, Wdr17 |
Microglia | Selplg, Hexb, Siglech |
Pericytes | Rgs5, Kcnj8, Abcc9 |
VLMC | Col3a1, Bnc2, Col25a1 |
Activated Astrocytes/Microglia | Csf1r, Trem2, Itgb2, Mertk, Bcl6, Fcgr1 |